Basic Biostatistics for Geneticists and Epidemiologists: A Practical Approach
- Surveys basic statistical methods used in the genetics and epidemiology literature, including maximum likelihood and least squares.
- Introduces methods, such as permutation testing and bootstrapping, that are becoming more widely used in both genetic and epidemiological research.
- Is illustrated throughout with simple examples to clarify the statistical methodology.
- Explains Bayes’ theorem pictorially.
- Features exercises, with answers to alternate questions, enabling use as a course text.
Written at an elementary mathematical level so that readers with high school mathematics will find the content accessible. Graduate students studying genetic epidemiology, researchers and practitioners from genetics, epidemiology, biology, medical research and statistics will find this an invaluable introduction to statistics.
1. INTRODUCTION: THE ROLE AND RELEVANCE OF STATISTICS, GENETICS AND EPIDEMIOLOGY IN MEDICINE.
What Exactly Is (Are) Statistics?
Reasons for Understanding Statistics
What Exactly is Genetics?
What Exactly is Epidemiology?
How Can a Statistician Help Geneticists and Epidemiologists?
Disease Prevention versus Disease Therapy.
A Few Examples: Genetics, Epidemiology and Statistical Inference.
2. POPULATIONS, SAMPLES, AND STUDY DESIGN.
The Study of Cause and Effect.
Populations, Target Populations, and Study Units.
Probability Samples and Randomization.
3. DESCRIPTIVE STATISTICS.
Why Do We Need Descriptive Statistics?
Scales of Measurement.
Proportions and Rates.
Relative Measures of Disease Frequency.
Sensitivity, Specificity, and Predictive Values.
Measures of Central Tendency.
Measures of Spread or Variabillty.
Measures of Shape.
4. THE LAWS OF PROBABILITY.
Definition of Probability.
The Probability of Either of Two Events: A or B.
The Joint Probability of Two Events: A and B.
Examples of Independence, Nonindependence, and Genetic Counseling.
5. RANDOM VARIABLES AND DISTRIBUTIONS.
Variability and Random Variables.
A Note about Symbols.
Cumulative Distribution Functions.
The Standard Normal (Gaussian) Distribution.
6. ESTIMATES AND CONFIDENCE LIMITS.
Estimates and Estimators.
Notation for Population Parameters, Sample Estimates, and Sample Estimators.
Properties of Estimators.
Distribution of the Sample Mean.
7. SIGNIFICANCE TESTS AND TESTS OF HYPOTHESES.
Principle of Significance Testing.
Principle of Hypothesis Testing.
Testing a Population Mean.
One-Sided versus Two-Sided Tests.
Testing a Proportion.
Testing the Equality of Two Variances.
Testing the Equality of Two Means.
Testing the Equality of Two Medians.
Validity and Power.
8. LIKELIHOOD RATIOS, BAYESIAN METHODS AND MULTIPLE HYPOTHESES.
Bayesian Estimates and Credible Intervals.
The Multiple Testing Problem.
9. THE MANY USES OF CHI-SQUARE.
The Chi-Square Distribution.
Inference About the Variance.
Likelihood Ratio Tests.
Further Reading .
10. CORRELATION AND REGRESSION.
Simple Linear Regression.
The Straight-Line Relationship When There is Inherent Variability.
Spearman’s Rank Correlation.
Multiple Correlation and Partial Correlation.
Regression toward the Mean.
11. ANALYSIS OF VARIANCE AND LINEAR MODELS.
Multiple Treatment Groups.
Completely Randomized Design with a Single Classification of Treatment Groups.
Data with Multiple Classifications.
Analysis of Covariance.
Assumptions Associated with the Analysis of Variance.
12. SOME SPECIALIZED TECHNIQUES.
Analysis of Survival Times.
Estimating Survival Curves.
13. GUIDES TO A CRITICAL EVALUATION OF PUBLISHED REPORTS.
The Research Hypothesis.
The Study Design.
Completeness of the Data.
Appropriate Descriptive Statistics.
Appropriate Statistical Methods for Inferences.
Logic of the Conclusions.
- Written for those with little or no statistical background.
- Surveys up-to-date statistical methods used in genetics and epidemiology literature, including meta-analysis.
- Gives rationale underlying concepts to allow a better understanding of the appropriateness of procedures in given circumstances.
- Includes examples of computer code for implementation of the methodology.
- Features exercises, enabling use as a course text.
- Supported by a Web site featuring full data sets and extra computer code.
"The book is unusual in having less ambitious goals than the average statistics textbook. The focus is not to teach applications but, as the preface maintains, simply to enable readers to knowledgeably read the new literature, to understand the statistical methods used, and thereby to better keep abreast of new findings in epidemiology and genetics." (JAMA, September 13, 2010)
"This is a well-written and comprehensive review of the basic (and not-so-basic) concepts and techniques in biostatistics. It is understandable to biologists and clinicians, while still providing useful pointers and reminders to statisticians. It is worth a place on the bookshelves of all researchers in genetics, regardless of their statistical expertise." (Human Genetics, February 2010)
"Anyone who wishes to critically read biomedical literature will find the knowledge gained from reading [the text] of great value." (American Journal of Epidemiology, 2009)
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