Virtual Reconstruction

Data Format Applet

Instructions:

  • This applet shows how the digital representation of an image is transformed into a visual representation.
  • The panel on the left side gives control over data format parameters, the panel on the right on imaging parameters.
  • Left panel: Load any of the grayscale image files. Explore how the visual "interpretation" of the digital data stream depends on parameters specifying the image format (the "Default" button will set all parameters to adequate values). Play with the "Bits per Pixel", "Width" and "Height" values and observe "raster shift" effects.
  • Right panel: The ramp function in the top frame (red line) indicates how each pixel value is mapped onto the 256 grayscale values available on your computer monitor. Use the "Width" and "Center" sliders to change the slope and position of the ramp and observe corresponding changes in contrast and brightness of the image.
  • For 16 bit images you may want to use the "Hounsfield units" switch to limit the pixel values to 12 bits

Image Files:

  • mu_ct_8bit_220x220: MicroCT of terminal phalanx of a monkey; 220x200 pixel, 8bit/pixel; header size 0; 0.045mm/pix
  • mri_16bit_256x256: MRI of human head; 256x256 pixel, 16bit/pixel; header size 4832; 1.562mm/pix
  • ct_16bit_512x512: CT of human head; 512x512pixel; header size 194; 5120.586mm/pix, swapped
Download Java Application (local execution allows you to load your own files)
  • download DataFormat.jar (e.g. to your desktop)
  • execution:
    • Windows / Mac : double click on icon
    • shell / dos: >>java -jar DataFormat.jar

0. Introduction
1. Virtual Reconstruction
2. Data Representation
Data Format Applet
Color Applet
Links
3. Data Acquisition
Links
4. Image Data Processing
Filter Applet
Links
5. Visualization and Interaction
Transformation Applet
Links
Software Hints
6. Virtual Fossil Reconstruction
Links
Software Hints
7. From VR to RV
Links
8. Morphometric analysis
Links
Figure 8.23 (color)


Available from John Wiley & Sons

Virtual Reconstruction:
A Primer in Computer-Assisted Paleontology and Biomedicine

Virtual Reconstruction: A Primer in Computer-Assisted Paleontology and Biomedicine

Christoph P. Zollikofer,
Marcia Ponce de Leon

ISBN: 0-471-20507-9
Hardcover
333 pages
June 2005

Find out more