Genetics Genomics Proteomics Bioinformatics   GENOMICS Genome Sequencing id number >> Section Editor: Bruce A. Roe, University of Oklahoma, Oklahoma, USA Eukaryotic genomics - Mark D. Adams Genome sequencing of microbial species - Jacques Ravel, Claire M. Fraser Hierarchical, ordered mapped large insert clone shotgun sequencing - Bruce A. Roe Sequencing templates-shotgun clone isolation versus amplification approaches - Rebecca Deadman, Carl W. Fuller Robotics and automation - Elaine R. Mardis Microelectrophoresis devices for DNA sequencing - Daniel J. Ehrlich, James H. Aborn, Sameh A. El-Difrawy, Elizabeth A. Gismondi, Roger Lam, Brian McKenna, Thomas O'Neil Single molecule array-based sequencing - Simon T. Bennett, Tony J. Smith Real-time DNA sequencing - Susan H. Hardin Mapping id number >> Section Editor: Marco A. Marra, Genome Sciences Centre, Vancouver, Canada Linking DNA to production: the mapping of quantitative trait loci in livestock - Stephen S. Moore, Christiane Hansen, Changxi Li Genome mapping overview - Michael Lovett, Wesley C. Warren Mapping complex disease phenotypes - David A Collier YAC-STS content mapping - Claudia Gosele, Heike Zimdahl, Norbert Hubner Haplotype mapping - Alexandre Montpetit, Fanny Chagnon, Thomas J. Hudson The construction and use of radiation hybrid maps in genomic research - André Eggen, Mathieu Gautier Linkage mapping - Marie-Pierre Dubé, Mark E. Samuels Synteny mapping - Simon G. Gregory Linkage disequilibrium and whole genome association studies - Angela R. Brooks-Wilson, Karen L. Novik Fingerprint mapping - Jacqueline E. Schein, Martin I. Krzywinski Hitchhiking mapping - Christian Schlötterer Restriction fragment fingerprinting software - Carol A. Soderlund Microarray comparative genome hybridization - Robert A. Holt, Martin Krzywinski The Happy mapping approach - Francis Galibert The technology tour de force of the Human Genome Project - Elaine Mardis The Human Genome id number >> Section Editor: Richard K. Wilson, Genome Sequencing Center, Washington University, St. Louis, USA The human genome project - Tim Hubbard Noncoding RNAs in mammals - Timothy Ravasi, David A. Hume Segmental duplications and the human genome - Rhea U. Vallente, Evan E. Eichler Genome assembly - Michael C. Wendl, John W. Wallis, Shiaw-Pyng Yang, Asif T. Chinwalla, LaDeana W. Hillier The distribution of genes in human genome - Giorgio Bernardi Pseudogenes - David Torrents Endogenous retroviruses - Jens Mayer Transcriptional promoters - Wyeth W. Wasserman Comparisons with primate genomes - Mariano Rocchi, Nicoletta Archidiacono Alternative splicing: conservation and function - Mikhail S. Gelfand, Evgenia V. Kriventseva Overlapping genes in the human genome - Izabela Makalowska Human microRNAs - Sam Griffiths-Jones Model organisms, functional and comparative genomics id number >> Section Editor: Steve D. M. Brown, MRC Mammalian Genetics Unit, Harwell, UK Genome archaeology - Samuel Aparicio Functional analysis of genes - Rick Woychik, Carol Bult Mouse models - Michelle E. Goldsworthy, Roger D. Cox The rat as a model physiological system - Dominique Gauguier Farm animals - Leif Andersson Mouse mutagenesis and gene function - Ralf Kühn, Wolfgang Wurst Systematic mutagenesis of non-mammalian model species - David Sattelle, Marcel van den Heuvel The Fugu and Zebrafish genomes - Greg Elgar Functional genomics in Saccharomyces cerevisiae - Kara Dolinski, Olga Troyanskaya The mouse genome sequence - Ian J. Jackson The C. elegans genome - Jonathan Hodgkin The Drosophila genome(s) - Steven Russell, Casey M. Bergman Comparative sequencing of vertebrate genomes - Matthew E. Portnoy, Eric D. Green Bacteria/Pathogens id number >> Section Editor: Julian Parkhill, The Wellcome Trust Sanger Institute, Cambridge, UK Eukaryotic parasite genome projects - Neil Hall Bacterial pathogens of man - Julian Parkhill Genomics of the Mycobacterium tuberculosis complex and Mycobacterium leprae - Stephen V. Gordon, Roland Brosch The Mycoplasmas-a congruent path toward minimal life functions - Leka Papazisi, Scott N. Peterson Genomics of enterobacteriaceae - Jeremy D. Glasner, Nicole T. Perna Reverse vaccinology: a critical analysis - Guido Grandi The nuclear genome of apicomplexan parasites - James W. Ajioka, Elizabeth T. Brooke-Powell, Kiew-Lian Wan The organelles of apicomplexan parasites - James W. Ajioka, Elizabeth T. Brooke-Powell, Kiew-Lian Wan Kinetoplastid genomics - Chris Peacock, Christiane Hertz-Fowler Methods for detecting horizontal transfer of genes - Jeffrey G. Lawrence Genome-wide analysis of group A Streptococcus - Nicole M. Green, James M. Musser Chlamydiae - Timothy D. Read Environmental shotgun sequencing - Gene W. Tyson, Philip Hugenholtz The neisserial genomes: what they reveal about the diversity and behavior of these species - Nigel J. Saunders, Lori A. S. Snyder The staphylococci - Steven R. Gill Yersinia - Nicholas R. Thomson Spirochete genomes - George Weinstock Comparative genomics of the e-proteobacterial human pathogens Helicobacter pylori and Campylobacter jejuni - Nick Dorrell, Wren Brendan SNPs/Haplotypes id number >> Section Editor: Mark Daly, Whitehead Institute Center for Genome Research, Massachusetts, USA Normal DNA sequence variations in humans - Kenneth K. Kidd History of genetic mapping - Newton E. Morton Reliability and utility of single nucleotide polymorphisms for genetic association studies - C. Leigh Pearce, Joel N. Hirschhorn SNPs and human history - Jeffrey D. Wall Pharmacogenetics and personalised medicine - Alun D McCarthy, James L Kennedy, Lefkos T Middleton Creating LD maps of the genome - Andrew Collins, Sarah Ennis Avoiding stratification in association studies - Bernie Devlin, Kathryn Roeder Evolutionary modeling in haplotype analysis - Peter Donnelly Genotyping technology: the present and the future - Pui-Yan Kwok, Ting-Fung Chan Mapping by admixture linkage disequilibrium (MALD) - Michael William Smith Finding and using haplotype blocks in candidate gene association studies - Daniel O Stram EST's: Cancer Genes & Anatomy Project id number >> Section Editor: Winston Hide, South African National Bioinformatics Institute, University Western Cape, Bellville, South Africa Technologies for systematic analysis of eukaryotic transcriptomes - Robert L. Strausberg What is an EST? - Andrey Ptitsyn, Winston A. Hide Using ORESTES ESTs to mine gene cancer expression data - Sandro J. de Souza, Pedro A.F. Galante, Rodrigo Soares Using ESTs for genome annotation - predicting the transcriptome - Eduardo Eyras EST resources, clone sets, and databases - Janet F. Kelso Proteome knowledge bases in the context of cancer - Djamel Medjahed, Peter A. Lemkin The role of nonsense-mediated decay in physiological and pathological processes - Jill A. Holbrook, Gabriele Neu-Yilik, Matthias W. Hentze, Andreas E. Kulozik Pilot gene discovery in plasmodial pathogens - Jane M. Carlton Disease gene candidacy and ESTs - Mark I. McCarthy EST clustering: A short tutorial - Winston A. Hide Using UniGene, STACK, and TIGR indices - Alan G. Christoffels Manufacturing EST libraries - Marcelo B. Soares, Maria F. Bonaldo Expression Profiling id number >> Section Editor: John Quackenbush, Harvard School of Public Health, Massachusetts, USA Microarrays: an overview - Jörg D. Hoheisel Microarray CGH - Denis A. Smirnov, Vivian G. Cheung Expression and localization of proteins in mammalian cells - Jennifer L. Stow, Rohan D. Teasdale The promise of gene signatures in cancer diagnosis and prognosis - Jimmy C. Sung, Alice Y. Lee, Timothy J. Yeatman Creating and hybridizing spotted DNA arrays - Ivana V. Yang Using oligonucleotide arrays - Eric P Hoffman, Lindsay W Mitchell Integrating genotypic, molecular profiling and clinical data to elucidate common human diseases - Alan Sachs, Eric E. Schadt Genomic analysis of host pathogen interactions - Catherine V. Gale, Paul Kellam Bacterial genome organization: comparative expression profiling, operons, regulons, and beyond - Scott N. Peterson Protein microarrays as an emerging tool for proteomics - Ji Qiu, Sam Hanash Seven years of yeast microarray analysis - Gavin Sherlock, Paul T. Spellman Tissue microarrays - Guido Sauter, Martina Mirlacher, Ronald Simon The use of external controls in microarray experiments - Joop M.L.M. van Helvoort, Dik van Leenen, Frank C.P. Holstege SAGE - Seth Blackshaw